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#INSTALL LAPACK ON MAC OS X SOFTWARE#Much sense to me, since brew is deploying the package to the exact same directory /opt/X11 and it is using the exact same software under the hood as far as I can tell.īut honestly, who wants to work with R in X console on a Mac when there are so many better options? If you run MRO in the Mac terminal it works great. #INSTALL LAPACK ON MAC OS X FOR MAC#Brew is the tool of choice for Mac developers and it's silly that Microsoft didn't try to get it to work with the brew version. #INSTALL LAPACK ON MAC OS X FULL#Moreover, it's obvious that whoever is doing this over at Microsoft isn't a full time Mac developer. You have to force quit the app.My guess is the problem is an incompatibility in the libraries of the latest version of XQuartz with the R Open app. It doesn't matter whether you have the brew version or the dowloaded version, the R Open app won't work. The problem is NOT with XQuartz, as far as I can tell, but with the Microsoft R Open app, which is a wrapper over an X console. ![]() So here's my take on this issue after installing MRO 3.2.2 today as well as the latest version of XQuartz 2.7.11 I have to work with CRAN R 3.3.1 for now but hope this MRO 3.3.1 issue will be solved soon. ![]() I am not going into details of the errors with MRO 3.3.1 because I have an urgent task to be completed with the above mentioned package. The above command completed without an error. Then I removed MRO 3.3.1 completely and re-installed CRAN R 3.3.1. But the above command stopped with errors. Then I removed CRAN R 3.3.1 completely and re-installed MRO 3.3.1 from a freshly downloaded package. The above package installation worked without an error. I removed MRO 3.3.1 completely and installed CRAN R 3.3.1 () from R-3.3.1pkg. Install_github("al2na/methylKit", build_vignettes=FALSE, For example, the following command was aborted at a very early stage of installation: ![]() > library("AnnotationDbi", lib.loc="~/Library/R/3.3/library")Īlthough some Bioconductor packages were successfully installed with MRO 3.3.1, some did not work. ** testing if installed package can be loaded Ĭreating a new generic function for ‘packageName’ in package ‘AnnotationDbi’Ĭreating a generic function for ‘toString’ from package ‘base’ in package ‘AnnotationDbi’Ĭreating a generic function for ‘ls’ from package ‘base’ in package ‘AnnotationDbi’Ĭreating a generic function for ‘eapply’ from package ‘base’ in package ‘AnnotationDbi’Ĭreating a generic function for ‘exists’ from package ‘base’ in package ‘AnnotationDbi’Ĭreating a generic function for ‘sample’ from package ‘base’ in package ‘AnnotationDbi’ * installing *source* package ‘AnnotationDbi’. Lrwxr-xr-x 1 toshishioda wheel 13 Sep 1 12:29 /opt/X11/lib/libXt.dylib -> libXt.7.dylibīioconductor package installation gives the same error, but the package seems to have been installed. In /Library/Frameworks/R.framework/Resources/modules//R_X11.so Referenced from: /Library/Frameworks/R.framework/Resources/modules//R_X11.so Unable to load shared object '/Library/Frameworks/R.framework/Resources/modules//R_X11.so':ĭlopen(/Library/Frameworks/R.framework/Resources/modules//R_X11.so, 6): Symbol not found: _CGBitmapContextCreate In doTr圜atch(return(expr), name, parentenv, handler) : Using 2 cores for math algorithms.ĭefault CRAN mirror snapshot taken on. Multithreaded BLAS/LAPACK libraries detected. ![]() Microsoft packages Copyright (C) 2016 Microsoft Corporation The enhanced R distribution from Microsoft Lrwxr-xr-x 1 roffe wheel 13 Aug 28 21:54 /opt/X11/lib/libXt.dylib -> libXt.7.dylib ![]()
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